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Full Guide to Integrating QuickBooks Desktop into the Windingflow Order System for Seamless Order Automation

Alice Yang
June, 01 2025

The entire integration process takes less than 10 minutes and completes the automation setup from order to invoice.

If you're looking for an efficient and reliable method to integrate QuickBooks Desktop with your e-commerce order system, this article provides a complete solution. Windingflow supports syncing sales order data to local QuickBooks, enabling automated invoice generation from orders. This integration delivers a powerful order automation experience for businesses using QuickBooks.

Integration Advantages

If you're already using QuickBooks, you can immediately integrate with Windingflow to enhance your order management automation and streamline financial workflows.

Integration Overview , 8 Steps Total

The entire operation takes less than 10 minutes

  1. Install QuickBooks Desktop for financial tracking
  2. Configure basic integration fields in QuickBooks
  3. Add QuickBooks connection in the Windingflow order system
  4. Install QuickBooks Web Connector to enable data exchange
  5. Connect Web Connector to the order automation system
  6. Sync product data from Windingflow to QuickBooks Desktop
  7. Send invoice data from order system to QuickBooks
  8. Use and monitor QuickBooks Web Connector for ongoing sync

Step 1: Install QuickBooks Desktop

Download link: https://dlm2.download.intuit.com/akdlm/SBD/QuickBooks/2022/Latest/QuickBooksEnterprise22.exe

After downloading, select the default path and follow the prompts to complete the installation.

Step 2: Configure Basic Information

To integrate with Windingflow, you need the following key data for order synchronization:

Company File Path: After starting QuickBooks, press F2 (or Fn+F2) to view the path in the pop-up window.

Customer Name: Create a dedicated customer entity for syncing sales orders.

When a sales order syncs to a QuickBooks invoice, it binds to this customer.

Product Category Accounts: Include income account, cost of goods sold (COGS) account, and asset account.

These accounts are essential for mapping Windingflow product data to QuickBooks financial categories.

Step 3: Add Connection in Windingflow

Go to the settings module in the order system and click the “Add QuickBooks Connection” button. Fill in the following fields to enable QuickBooks Desktop integration:

Step 4: Install Web Connector

This tool is officially released by QuickBooks to support local integration and order automation.

Installation Steps:

  1. Unzip the downloaded package

  2. Before installing Web Connector, you need to install QuickBooks, then close QuickBooks, otherwise you will get the following prompt:

  3. Install dependency component: NDP451-KB2858728-x86-x64-AllOS-ENU(.exe)

  4. Install Web Connector: QBWebConnectorInstaller(.exe)

    After installation, if no shortcut appears, search “Web Connector” in the Start menu

Step 5: Connect Web Connector to System

After successfully installing Web Connector, you need to open the QuickBooks software to continue connecting SO with Web Connector

  1. Open QuickBooks software

  2. Open Web Connector

  3. Click “Add Application” to import the .qwc file

  4. Check the box and click “Update Selected” to test the connection

QuickBooks must be open before connecting

Step 6: Sync Product Data

Associate the instance with QuickBooks Desktop

Navigate to the Main Product module in the order system. Click on the "Main Product" menu to enter the main product list. Click the "Send To QuickBooks" button to initiate the product synchronization process. Wait for the product status to update to "success". Once this occurs, the products have been successfully synchronized to QuickBooks.

Export IFF file and import it into QuickBooks for product synchronization

If the shipping method does not exist, add it manually

Step 7: Send Invoice Data

Automatic Sending:

  1. In the fulfillment interface, click “Create Invoice”
  2. The system pushes invoice data to the queue; Web Connector syncs periodically
  3. View status in the Invoice module

Manual Sending (for exception handling):

If you encounter unexpected situations and sending fails, in the Invoice interface, you can check the Invoice and then click Send To QuickBooks. Currently, it will only process Invoices that are not in Success status.

View the invoice in QuickBooks

Step 8: Use and Monitor Web Connector

In the image above, indicator 1 shows how to manually sync queued data to QuickBooks, while indicator 2 represents the automatic sync, which runs every 10 minutes by default to support continuous order automation. Manually Start Connecting

Exception Feedback

As the log is only recorded on the local computer, when an error occurs, please click view log, and then send the error information to us via email.

After completing the above steps, Windingflow and QuickBooks Desktop can achieve full integration for order automation, allowing sales orders to flow into your financial system with minimal effort.

Start your QuickBooks integration with Windingflow now!